Salmon from chronic anthropogenic mortality

Can the creation of new freshwater habitat
demographically offset losses of Pacific
salmon from chronic anthropogenic
Pascale GibeauID1
*, Michael J. BradfordID2
, Wendy J. Palen1
1 Department of Biological Sciences, Earth to Ocean Research Group, Simon Fraser University, Burnaby,
British Columbia, Canada, 2 Fisheries and Ocean Canada, Pacific Science Enterprise Centre, West
Vancouver, British Columbia, Canada
* [email protected]
Over 1 billion USD are devoted annually to rehabilitating freshwater habitats to improve survival for the recovery of endangered salmon populations. Mitigation often requires the creation of new habitat (e.g. habitat offsetting) to compensate population losses from human
activities, however offsetting schemes are rarely evaluated. Anadromous Pacific salmon are
ecologically, culturally, and economically important in the US and Canada, and face numerous threats from degradation of freshwater habitats. Here we used a matrix population
model of coho salmon (Oncorhynchus kisutch) to determine the amount of habitat offsetting
needed to compensate mortality (2–20% per year) caused by a range of development activities. We simulated chronic mortality to three different life stages (egg, parr, smolt/adult),
individually and simultaneously, to mimic impacts from development, and evaluated if the
number of smolts produced from constructed side-channels demographically offset losses.
We show that under ideal conditions, the typical size of a constructed side-channel in the
Pacific Northwest (PNW) (3405 m2
) is sufficient to compensate for only relatively low levels
of chronic mortality to either the parr or smolt/adult stages (2–7% per year), but populations
do not recover if mortality is >10% per year. When we assumed lower productivity (e.g.; 25th
percentile), we found that constructed channels would need to be 2.5–4.5 fold larger as compared to the typical size built in the PNW, respectively, to maintain population sizes. Moreover, when we imposed mortality to parr and smolt/adult stages simultaneously, we found
that constructed side-channels would need to be between 1.8- and 2.3- fold larger that if the
extra chronic mortality was imposed to one life stage only. We conclude that habitat offsetting has the potential to mitigate chronic mortality to early life stages, but that realistic
assumptions about productivity of constructed side-channels and cumulative effects of
anthropogenic disturbances on multiple life stages need to be considered.
PLOS ONE | December 17, 2020 1 / 15
Citation: Gibeau P, Bradford MJ, Palen WJ (2020)
Can the creation of new freshwater habitat
demographically offset losses of Pacific salmon
from chronic anthropogenic mortality? PLoS ONE
15(12): e0237052.
Editor: Rachel A Hovel, University of Maine at
Received: July 14, 2020
Accepted: December 3, 2020
Published: December 17, 2020
Peer Review History: PLOS recognizes the
benefits of transparency in the peer review
process; therefore, we enable the publication of
all of the content of peer review and author
responses alongside final, published articles. The
editorial history of this article is available here:
Copyright: © 2020 Gibeau et al. This is an open
access article distributed under the terms of the
Creative Commons Attribution License, which
permits unrestricted use, distribution, and
reproduction in any medium, provided the original
author and source are credited.
Data Availability Statement: All relevant data are
within the paper and its Supporting information
Society spends billions of dollars annually to mitigate impacts of human activities on biotic
communities and abiotic processes. The stakes of such ecological and economic trade-offs
are high, as total investments in energy, water, and infrastructure development projects are
expected to exceed $53 trillion (US) worldwide between 2010 and 2030 (OECD 2012 in [1]).
Regulatory agencies often require that developers apply the mitigation hierarchy, which consists of avoidance, then minimization, and finally offsetting for the impact of projects on ecosystems and biodiversity [1, 2]. In many jurisdictions, a requirement for “No Net Loss” of
biodiversity often results in the use of compensatory measures, such that losses from development are fully offset to maintain and stabilize population sizes after development [1]. For
example, in Canada, the Fisheries Act (2015) includes a provision to employ offsetting when
authorizing activities other that fishing that result in the death of fish.
Globally, most offsetting measures involve creating or restoring habitats, which is often done
in “like-for-like” schemes, where offsetting attempts to replace areas of a given habitat lost to
development by an equal or greater amount of the same habitat [2, 3]. When “like-for-like”
offsetting is not feasible, managers may employ a different approach called “out-of-kind” offsetting, where improving conditions for a different population, or easing pressures from a different
threat on the targeted population, may compensate the expected effects of development [1, 3].
For example, Barnthouse et al [4] describe a proposal to compensate fish mortality due to entrainment by water intake structures of a nuclear plant by removing a dam 50 km inland from the
facility. Other researchers have proposed restoration actions in “out-of-kind” offsetting schemes
to compensate for fishing mortality of American lobsters [5], and seabird bycatch [6]. However,
to our knowledge, the potential for “out-of-kind” habitat offsetting to compensate ongoing
chronic anthropogenic mortality at a population level has not been previously evaluated.
Here, we use a matrix population model of coho salmon (Oncorhynchus kisutch) in the
Pacific Northwest (PNW) of North America to evaluate the efficacy of “out-of-kind” offsetting
by estimating the amount of offsetting habitat that would be required to achieve “No Net Loss”
of productivity for salmon populations affected by anthropogenic development activities that
cause mortality. Coho salmon spawn in natal freshwater streams during late fall, and eggs
incubate buried in the substrate over the winter. Fry emerge in the spring and quickly transform into juveniles called parr, which typically remain in freshwaters until their second spring,
before migrating to the ocean as smolts. They finish their transformation to adulthood in the
ocean, where they spend another 18 months before returning to freshwaters to spawn [7].
Most coho salmon populations experience density-dependent survival bottlenecks during
their freshwater residency, most often in the spring immediately after fry emergence, since territorial fry compete for limited space and resources [8, 9]. Juvenile coho salmon rely on small
streams as freshwater nursery habitat, which makes them vulnerable to development activities
including the alteration of in-stream and adjacent terrestrial habitats from forestry practices
[8–10], other land-use changes [11], as well as the creation of barriers to migration and the
entrainment of fish in water intake structures of small and large hydropower dams (e.g. in the
Columbia River system, [14]). The off-channel habitats used by coho salmon juveniles, like
sloughs, side-channels, beaver ponds, or temporary to permanent floodplains, are thus often a
target for restoration or offsetting actions [12, 13]. Coho salmon represent a good species for
demonstrating the use of “out-of-kind” offsetting for chronic anthropogenic mortality as there
is sufficient empirical information on population dynamics as well as data on the efficacy of
offsetting or restoration measures.
We evaluated how much offsetting habitat (in m2
), in the form of constructed off-channel
habitat, was required to offset chronic mortality on coho salmon and maintain overall
Offsetting chronic anthropogenic mortality
PLOS ONE | December 17, 2020 2 / 15
Funding: NSERC Discovery Grant, the Gordon and
Betty Moore, and Wilburforce Foundations to WJP.
Competing interests: The authors have declared
that no competing interests exist.
population size and productivity. Specifically, our objective was to assess how chronic anthropogenic mortality to three coho salmon life history stages (eggs, parr, smolt/adult), individually
and simultaneously, influenced overall population dynamics, and thus, the effectiveness of
habitat offsetting. Using threatened populations of coho salmon to develop a quantitative
framework for balancing development losses and mitigation gains in “out-of-kind” schemes
serves the important call for research into addressing the uncertainty in offset analysis [1]. We
expected that the value of constructed offsetting habitats to the overall population dynamics of
coho salmon would depend on which life history stage(s) experienced additional mortality.
For example, we predicted that less offsetting would be needed when chronic mortality targeted individuals before they experienced density-dependent survival, or if individuals contributed to the main population by offsetting habitat did not also suffer the chronic mortality
(e.g. when offsetting habitats are located downstream of intake structures of dams).
To evaluate the amount of habitat offsetting required to maintain productivity for coho
salmon populations experiencing chronic mortality, we modelled the offsetting potential of
constructed offsetting habitat for three life stages of coho salmon: egg, parr, and smolt/adult.
We also evaluated how habitat offsetting requirements change when mortality occurs at
multiple life stages simultaneously. We focused on constructed side-channels because of their
importance for rearing and overwintering coho salmon juveniles [12, 14], and because they
are commonly used to limit or reverse the decline of anadromous salmon in the PNW [15, 16].
We created scenarios that varied the chronic mortality imposed on each life stage as well as
our assumptions about the number of smolts produced by offsetting habitats, to evaluate how
chronic mortality could be offset by adding offsetting habitat. We used a 3-stage deterministic
matrix population model with density-dependent survival in the fry to parr transition to assess
impacts to population size. The first set of scenarios (Egg scenarios) imposed mortality on eggs
prior to density-dependent survival. Egg scenarios encompass a wide range of activities known
to cause anthropogenic mortality to the egg stage, including increased sediment deposition or
scour of spawning areas following deforestation [8], thermal extremes [17], and dewatering of
spawning areas below dams [18, 19]. In Parr scenarios, we represented chronic anthropogenic
mortality caused by activities such as dam or powerplant entrainment [20, 21], flow fluctuations due to hydropower generation [22, 23] and degradation in water quality from forestry
practices or urbanization [9, 24]. In Smolt/Adult scenarios, we imposed chronic mortality to
represent impacts including smolt entrainment in, or passage over, dams [25, 26], or adult
mortality during upstream migration due to warmer temperatures downstream of dams or
powerplants [27]. In both the Parr and the Smolt/Adult scenarios, we assumed individuals
experienced chronic anthropogenic mortality after the period of density-dependent survival
(i.e., fry stage), but in the Smolt/Adult scenario, the smolts contributed by the constructed
side-channels also suffered the extra chronic mortality experienced by the main population
(e.g. in cases when offsetting habitats are constructed upstream of dams). We combined smolts
and adults in the same stage in our models because data on survival rates between when smolts
leave rivers and when spawning adults return were not available. Therefore, applying a chronic
mortality rate at any point during that stage in our models was mathematically equivalent.
Precise estimates of mortality by classes of anthropogenic disturbance are rare, and relating
stage-specific vital rates (e.g. survival) to degraded habitat conditions remains difficult [28].
Consequently, we simulated a broad range (2–20% per year) of chronic annual mortality to
represent disturbances causing relatively small to large annual mortality (e.g. juvenile
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PLOS ONE | December 17, 2020 3 / 15
entrainment in spillways or turbines of dams, [20]). We applied annual mortality rates to egg,
parr, and smolt/adult stages, both separately and in combination, to evaluate the potential population-level consequences of chronic anthropogenic impacts, and the scope for offsetting habitats to ameliorate those effects.
Deterministic matrix model
We created a deterministic 3-stage matrix model with a one-year time step to represent a typical 3-year coho salmon life-cycle [11, 15], and ran each simulation for 45 years to compare
the final population size under baseline conditions to those for scenarios varying life stages
affected, rates of chronic mortality, and sizes and productivity of offsetting habitat. The first
stage (F13) in our model thus includes adult fecundity (Pfem�Feggs), egg (φem), and fry (f(φspr))
survival, while the second stage (a21) includes the early months of adult survival (φoceY2) in the
ocean (Table 1). The third stage (a32) is made up of adult ocean survival as well as migration
upstream into spawning habitats (φoceY3). We estimated the parameters used in our model by
summarizing all data available in peer-reviewed publications from the PNW. We estimated
Pfem (proportion adult female) at 0.452 to reflect higher ocean mortality of adult females
compared to males (mean of two creeks, [29, 30]) and Feggs (mean fecundity) at 2597 eggs per
female (mean of 16 creeks, [31, 32]). We assumed a survival to emergence, φem, of 0.223 based
on studies from five creeks of the Pacific Northwest [33, 34]. Finally, we computed an overall
Table 1. Deterministic matrix model and scenarios per life stage.
0 0 F13
a21 0 0
0 a32 0
Ns þ NscompH
Na NacompH
[email protected]
[email protected]
Transition rate aij Parameter equations
Egg scenarios
Eggs to parr F13 Pfem � (Feggs � φdist) � φem � ƒ(φspr)
Parr to smolt a21 φoceY2
Smolt to adult a32 φoceY3
Parr scenarios (chronic mortality before offsetting)
Eggs to parr F13 Pfem � Feggs � φem � ƒ(φspr) � φdist
Parr to smolt a21 φoceY2
Smolt to adult a32 φoceY3
Smolt/Adult scenarios (chronic mortality after offsetting)
Eggs to parr F13 Pfem � Feggs � φem � ƒ(φspr)
Parr to smolt a21 φoceY2
Smolt to adult a32 φdist � φoceY3
φdist was highlighted in bold to emphasize that its location is the only one that changes across scenarios.
Pfem = proportion of females spawning (0.452); Feggs = # of eggs per female (2597); φem = survival from hatching to
emergence (0.223); f(φf_spr) = density-dependent survival of fry; φoceY2 = survival of smolt through 1st summer and
fall in ocean (0.392); φoceY3 = survival of adults in ocean (Year 3, 0.154); φdist = survival after chronic anthropogenic
disturbance (2, 5, 7, 10, 15, or 20%); Na = Number of adults; Na_compH = Minimum number of adults needed to seed
the offsetting habitat; Np = Number of parr; Ns = Number of smolts; Ns_compH = Number of smolts contributed by
the offsetting habitat.
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PLOS ONE | December 17, 2020 4 / 1
ocean survival of 6.04% based on the geometric mean of recent data from three wild coho
populations from the Pacific Northwest (prior to harvesting, [35, 36]), which reflects the high
ocean mortality suffered by coho populations in recent years. We then split the ocean survival
rate for each brood year between the six months of ocean survival in Year 2 (φoceY2) and 12
months in the ocean of Year 3 (φoceY3).
We assumed survival from fry to smolt was density-dependent with a bottleneck occurring
immediately after fry emergence in the spring, since territorial fry compete for limited
resources [37–39]. The density-dependent relationship was modelled with a Beverton-Holt
function [40]:
fðφsprÞ ¼ a � DfryðtÞ
1 þ a
� DfryðtÞ
h i ð1Þ
Where α is the number of smolts per fry at the origin, Dfry(t) is the number of fry at emergence
(i.e. Pfem � Feggs � φem), and k is the carrying capacity for smolts in the stream (smolts per km).
We modeled freshwater density-dependent survival after fry emergence by assuming α = 0.5
which is the average from 10 coho salmon populations in the PNW [33, 35]. We fixed the carrying capacity for smolts (k) at 15,318, corresponding to the mean k from field estimates (i.e.
1702 smolts/km, [35, 41]), multiplied by 9 km, the average length of the spawning or rearing
reaches of 10 streams.
We ran the deterministic model in the absence of added anthropogenic mortality with an
initial population size of 500 adults to calculate the stable final population sizes under baseline
conditions after 45 years (808 adults, 13,379 parr, and 5249 smolts). We used the stable final
population sizes at equilibrium as the starting population vector for all subsequent
We assumed offsetting side channels were fully functional immediately after construction,
produced smolts at the maximum capacity each year (k), and the capacity to produce smolts
remained constant over the length of the simulations. Spawning adults were first allocated to
constructed side-channels until fully seeded (Na_compH, varied with the size of offsetting simulated in each scenario), after which any remaining spawning adults were allocated to the main
channel. Assuming that the offsetting habitat is seeded at k at all time effectively assumes that
increasing size of offsetting habitat directly increases overall k of the system. We computed
Na_compH by using average vital rates,
NacompH ¼ NscompH
ðPfem � Feggs � �em � �f sÞ
where Ns_compH is the number of smolts contributed by the offsetting habitat (varied with the
size of side-channels in each scenario)and Ï•f_s is the average survival rate from fry to smolts in
the absence of density dependence (0.075).
We calculated how many smolts would need to be produced from constructed offsetting
habitats in order to maintain population productivity (i.e. achieve offsetting equivalency),
defined as population abundance returning to baseline (pre-impact) levels within 45 years. To
do so, we ran simulations for each chronic mortality rate and impacted life stage over a range
of offsetting habitat sizes constructed for coho salmon in the PNW (Fig 1, n = 27 sites, [12–
14]), and evaluated if offsetting equivalency was achieved in 45 years. In Parr scenarios, we
assume that the offsetting habitats were constructed downstream of the source of mortality so
that smolts produced in offsetting habitats were not exposed to the anthropogenic mortality.
In comparison, in Smolt/Adult scenarios, chronic anthropogenic mortality impacted smolts or
adults from both the offsetting habitat and main population. Finally, we assessed the additional
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PLOS ONE | December 17, 2020 5 / 1
offsetting requirements if chronic mortality occurred during both parr and smolt/adults stages.
To do so, we ran simulations with Ï•dist applied to parr in the second year of the life cycle (a21),
and to smolt/adults in the third year (a32).
Offsetting channels
Finally, our simulations also explored how assumptions about the productive capacity (i.e.
quality, expressed as # of smolts produced per m2
) of offsetting habitats influenced the size of
habitats needed to achieve offsetting equivalency. In the baseline scenario we assumed a mean
smolt production in side-channels of 0.47 smolts per m2
, corresponding to the mean production estimated from 33 constructed side-channels in the PNW [14, 42] (Fig 1b). We also
relaxed these assumptions and used the 25th (0.1 smolt / m2
), 50th (0.18 smolts / m2
), and 75th
(0.54 smolts /m2
) percentiles of smolt production as additional scenarios. All analyses were
performed in program R (version 3.5.1, R Core Team 2013 [43]) and an example of model R
code used for simulations is provided in S1 File.
Elasticity analyses
We performed a simulation-based elasticity analysis to assess how proportional changes in
population growth rate changed relative to proportional changes in the individual vital rates
included in the deterministic matrix model without density dependence [44]. We created
10,000 matrices with vital rates drawn at random from uniform distributions between the
upper and lower 95% confidence interval for each vital rate, and calculated the deterministic
growth rate (λ) [45]. Density-dependent fry survival (ƒ(φspr) was replaced by deterministic fry
survival in year 1 (φfryY1) and year 2 (φfryY2), that averaged 7.5%, the mean fry-to-smolt survival across the 10 creeks used to derive the Beverton-Holt density-dependent function [33,
35]. We used a general linear model with Gaussian distribution to decompose the variation in
lambda, in which the standardized regression coefficients associated with each vital rate in the
model estimate the proportional contribution of each vital rate to the variation observed in
lambda (i.e. elasticity, [44]).
The population-level effect of chronic anthropogenic mortality depended on whether the
chronic mortality occurred before or after the stage when density-dependent mortality
occurred (e.g. fry stage). When we modeled egg mortality without offsetting, the impact on
Fig 1. Distribution of (a) the size (m2
) of 27 side-channel habitats built in the PNW from [12–14], and (b) the
productivity of 33 side-channel habitats (# of smolts per m2
) built in the PNW from [14, 54].
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PLOS ONE | December 17, 2020 6 / 15
final population sizes was modest, with no more than a 3% reduction from the baseline population size. In comparison, when chronic mortality was imposed on parr or smolts/adults, i.e.
after the period of freshwater density dependence, the final population size declined as chronic
mortality increased (Fig 2).
Simulated populations that experienced chronic anthropogenic mortality benefitted from
the addition of smolts from constructed side-channels, regardless of the life stage affected (Fig
2). We found that final population sizes increased linearly with the size of constructed sidechannels until, and beyond, achieving offsetting equivalency (i.e. reaching adult abundances
similar to baseline levels). However, we found that the importance of side-channel offsetting
habitat varied depending on the timing of mortality in the coho salmon life cycle. For example,
a relatively small constructed side-channel was sufficient to achieve offsetting equivalency
when mortality impacted the egg stage, but the size of side-channels required to offset mortality occurring on the later life stages was much greater. For example, a small side-channel of
approximately 1000 m2 (i.e., smaller than the 10th percentile of side-channels built in the
PNW) could compensate for up to 20% chronic annual mortality to the egg stage, but only
2% chronic annual mortality to parr or smolts/adults. Generally, more offsetting habitat was
needed to achieve offsetting equivalency when smolts/adults were affected compared to parr,
especially if the intensity of chronic mortality was greater than 5% annually.
When chronic mortality was applied to both parr and smolt/adult life stages, the size of offsetting habitat needed to reach offsetting equivalency increased with the magnitude of chronic
mortality (Fig 3). The cumulative, or combined, effect of extra mortality on parr and smolt/
Fig 2. Change in final number of adults for impacted populations compared to baseline abundances (%, colors) over a range of sizes of constructed sidechannels (y-axis), annual chronic anthropogenic mortality (x-axis), and life stage (egg, parr, smolt/adult) affected by the chronic mortality (panels), assuming
mean productivity in constructed side-channels. 0 (white cells) indicates no change in final abundances of impacted populations compared to baseline, while
positive values (cool shades) mean offsetting increased the final number of adults in impacted populations and negative values (warm shades) mean final size of
impacted populations decreased despite the amount of offsetting habitat added. The black lines indicate offsetting equivalency for the combination of offsetting
habitat sizes and chronic mortality.
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PLOS ONE | December 17, 2020 7 / 15
adult stages was marginally additive, but became multiplicative when anthropogenic mortality
to smolt/adults was greater than 7%, and mortality to parr above 10%. For example, when an
additional 20% mortality was applied to both parr and smolt/adults stages annually, the size of
constructed side-channels needed to achieve equivalency increased by 1.8 to 2.3 times (from
6,336 m2 or 8259 m2
, respectively, to 14,867 m2
) compared to when the same chronic mortality
was applied to either the parr or smolt/adult stage separately.
Productivity of offsetting habitats
Our results suggest that assumptions regarding the productivity of offsetting habitats (i.e., the
number of smolts produced by the constructed side-channels) have a large effect on our conclusions regarding the size of offsetting needed to achieve offsetting equivalency. Based on the
25th percentile of productivity, the size of side-channels required to achieve offsetting equivalency was 4.5 times greater than if we assumed mean quality (Fig 4).
Elasticity analyses
Our simulation-based elasticity analyses assessed how population growth rates changed relative
to proportional changes in vital rates and indicated that survival of fry to smolt (Ï•f_s elasticity of
0.15) and adult ocean survival (elasticity of 0.16) had the largest influence on deterministic population growth rates. These two rates were three times more important than fecundity (Feggs) and
Fig 3. Range in size of offsetting habitat (m2
) (z-axis) required to effectively offset annual chronic mortality
ranging from 0 to 20% when chronic mortality is applied cumulatively to both parr (x-axis) and smolt/adult (yaxis) life stages. We assumed mean productivity in constructed side-channels (0.47 smolts per m2
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PLOS ONE | December 17, 2020 8 / 15
the survival of fry at emergence (elasticity of 0.051, 0.049, respectively), while the proportion of
females (Pfem) had very little influence on population growth (elasticity of 0.0007).
We used a matrix population model to compare how mortality at one life stage can or cannot
be offset by adding production of the same or a different life stage from offsetting habitat, in
an equivalency analysis using an “out-of-kind” scheme to meet requirement for No Net Loss
of population abundance. Our models suggest that the average size of constructed side-channels typically built in the PNW could compensate for chronic mortality of up to 20% annually
if it affected the egg stage, but only up to 7% if it affected parr, smolts, or adults. Averaged-size
side-channels would not be sufficient if added annual mortality was greater than 10% for parr
or smolt/adult stages, greater than 5% if both parr and smolt/adult stages were affected, or if
the productivity of side-channels is lower than the average values used in our baseline scenario.
Constructed side-channels have a wide range of productivities, measured as the number of
coho salmon smolts produced per m2
, because of differences in design and site-specific
Fig 4. Range in sizes of offsetting habitat (m2
) required to effectively offset annual chronic mortality ranging from 2 to 20% affecting, a) Egg, b) Parr, and c)
Smolt/Adult life stages, assuming varying productivity (# of smolts produced per m2
) for the constructed side-channels. Horizontal black lines indicate the 25th to
75th percentiles of productivity of offsetting habitat, black triangles represent mean number of smolts contributed, and stars represent median number of smolts
contributed by offsetting habitat (based on data from 33 sites, [14, 54]). The grey box represents the mean (vertical line) and 10th to 90th percentiles (shaded) of sizes
of offsetting habitats built in the PNW (n = 27 sites, data from [12–14]).
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PLOS ONE | December 17, 2020 9 / 15
considerations [14, 42]. Thus, a more precautionary approach to building side-channels for
coho salmon would assume less than ideal productivity in offsetting habitats. If we assumed
lower productivity, side-channels would need to be bigger than those required when we
assumed mean productivity (sensu [14, 42]). Additionally, our results suggest that offsetting
habitats are more effective at mitigating chronic mortality if they are built downstream of
where disturbances occur (i.e., as in the parr scenarios), such that smolts they produce are not
affected by chronic mortality experienced by the population in the main channel (which happens in the smolt/adult scenarios). Overall, if chronic mortality also affects the smolts contributed by the offsetting habitats (e.g. in cases of smolts entrainment into downstream dams or
increased ocean mortality), achieving offsetting equivalency will require more offsetting habitat to be built in freshwater.
As our modelling of an “out-of-kind” offsetting scheme highlights, designing effective sidechannels for offsetting is complex. Our results emphasize the importance of considering variation in productivity when deciding on the optimal size of offsetting habitat needed. However,
the size of constructed side-channels may also impact quality of the offsetting habitat. For
example, studies have noted a decline in smolt density with increasing side-channel sizes, suggesting that smaller side-channels may be more productive than large side-channels [14, 46].
Building numerous, but smaller, side-channels may also be more technically and economically
feasible than fewer large ones. In our models, we assumed that larger offsetting habitats could
be equally as productive as smaller habitats, but if productivity declines with increasing size or
through time due to degradation, our results may underestimate the sizes needed to maintain
population equivalency. In addition, we simulated constructed side-channels to always be fully
seeded (i.e. used at maximum density by spawning adults), and this conservative assumption,
if incorrect, may further underestimate the size of habitat needed to offset chronic mortality.
Adding to the complexity of designing constructed side-channels of adequate size and quality, the size and the number of side-channels are frequently chosen based on availability of
land and costs of restoration rather than based on ecological bottlenecks or the potential for
success [14]. Such an opportunistic selection of offsetting sites is stated as one reason why “No
Net Loss” of productivity is not often achieved in practice, since offsetting habitat that is not
structurally functional may have little effect on salmon populations [47]. Our results suggest
that intentionally siting side-channels downstream of where anthropogenic impacts occur
would be more effective at compensating for chronic mortality. However, downstream reaches
of streams and rivers are often less stable geomorphologically [48, 49], and the substantial
investment required to build offsetting habitats in low-elevation floodplains could be lost if, or
when, natural large flow events occur.
Other challenges to building effective side-channels habitats include the need for connectivity between the offsetting habitats and main channel, which is crucial to ensure the success of
mitigation [50, 51]. For example, schooling of juveniles and limited migration may lower the
carrying capacity of constructed side-channels by limiting the number of fry that move in
from spawning or rearing grounds [52]. Salmon also need dynamic and diverse freshwater
habitats to thrive, and offsetting projects will be more effective if they consider natural evolutionary processes needed for the health and resilience of the species [53–55], especially considering the added challenges posed by accelerating climate change. For example, improving
temperature and flow regimes through riparian restoration and increased food availability
may improve the tolerance of salmon populations to warmer water temperatures induced by
climate change [51]. Our results support the conclusion that cumulative impacts from multiple
sources of anthropogenic mortality on more than one life-stage simultaneously can have compounding (i.e. multiplicative) effects on population dynamics, and increase the need for mitigation and offsetting activities. As such, our simulations of only a single life stage experiencing
Offsetting chronic anthropogenic mortality
PLOS ONE | December 17, 2020 10 / 15
chronic mortality are likely to be underestimates of the minimum sizes of constructed sidechannels needed to maintain population sizes in the face of multiple, overlapping sources of
anthropogenic mortality (e.g. [9]). Finally, the sound application of our modeling approach
requires realistic estimates of mortality resulting from development projects. Offsetting
requirements are usually determined during project design phases, and the mortality associated with anthropogenic activities are usually estimated from other sources of knowledge and
coupled with site-specific information about populations that may be affected by the project.
Commonly, estimated or predicted mortality rates are highly uncertain. However, that uncertainty can be incorporated by our modeling approach to evaluate its effects on offsetting
At the population level, our results highlight that the potential for effective mitigation of
added chronic mortality depends both on understanding the influence of density-dependent
survival in affected populations, as well as on the unequal contributions of different life stages
to the overall population dynamics. For example, natural density-dependent bottlenecks may
compensate for some mortality caused by anthropogenic disturbances if it occurs prior to periods of negative density dependent survival [56], and influence the need for offsetting habitat.
Our results showing only modest population-level impacts of additional egg mortality illustrate the low elasticity of the egg stage to affect overall population dynamics, as well as the
potential for density-dependent survival to compensate for some anthropogenic mortality.
Independently from the issue of density dependence, our elasticity analysis also highlights the
large influence that variation in fry-to-smolt survival (elasticity of 0.15) has on population
growth, which further emphasizes the importance of survival at that stage for salmon conservation efforts. However, it is risky to rely on natural density dependence to compensate for
chronic anthropogenic mortality as it remains very challenging to detect if, when and how
strong density-dependent survival bottlenecks occur in freshwater for specific populations [52,
57, 58]. Moreover, density-dependent survival may only compensate for additional mortality
when population sizes are large (e.g. approaching carrying capacity, [59]), which may be
uncommon for many anadromous salmon populations currently impacted by anthropogenic
disturbances [60], unless such disturbances also lower freshwater carrying capacity [61].
Finally, other forms of density dependence may enhance the efficacy of offsetting habitat in
mitigating the effects of disturbances. For example, density-dependent migration, whereby
individuals in areas with high densities move to areas with lower densities, allows the offsetting
habitat to be more effectively populated by encouraging more individuals to colonize it [61].
Overall, given the difficulty in adequately assessing the presence, timing, and strength of density-dependent survival in freshwater, long-term studies of population dynamics of local populations appear crucial to adequately design effective offsetting habitats.
Our results suggest that offsetting habitats built for coho salmon in freshwater have the potential to mitigate some chronic and ongoing mortality. However, our results also indicate that
achieving offsetting equivalency may require creating a much larger amount of side-channel
habitat than is typically constructed in the PNW [14, 42], especially when we relaxed assumptions about ideal smolt productivity in constructed side-channels, or considered cumulative
impacts to multiple life stages. Moreover, our results illustrate how life-cycle population models can be a powerful tool to examine the efficacy of restoration efforts targeted to different life
stages for overall population dynamics. We show that matrix population models can be used
to quantitatively estimate the uncertainty in “out-of-kind” offset analysis, though their utility
can be limited by the availability of site-specific information on population productivity and
Offsetting chronic anthropogenic mortality
PLOS ONE | December 17, 2020 11 / 15
the magnitude of anthropogenic mortality. Protecting and restoring threatened salmon populations in the PNW requires a critical evaluation of the efficacy of policies and practices of
industry and regulators. Overall, the importance of side-channels for juvenile coho salmon
and the large influence of fry-to-smolt survival rates on overall population dynamics suggested
by our elasticity analysis highlight the value of building side-channels as offsetting habitat for
coho salmon, despite the complexity and challenges involved.
Supporting information
S1 File.
We thank K. Wilson, D.A Greenberg, A. Cantin, R. Murray, and J.W. Moore for help and
comments that greatly improved the manuscript.
Author Contributions
Conceptualization: Pascale Gibeau, Michael J. Bradford, Wendy J. Palen.
Data curation: Pascale Gibeau, Michael J. Bradford.
Formal analysis: Pascale Gibeau, Michael J. Bradford, Wendy J. Palen.
Funding acquisition: Wendy J. Palen.
Investigation: Pascale Gibeau.
Methodology: Pascale Gibeau, Michael J. Bradford, Wendy J. Palen.
Project administration: Pascale Gibeau.
Resources: Pascale Gibeau, Wendy J. Palen.
Software: Pascale Gibeau.
Supervision: Michael J. Bradford, Wendy J. Palen.
Validation: Pascale Gibeau, Michael J. Bradford.
Visualization: Pascale Gibeau, Michael J. Bradford, Wendy J. Palen.
Writing – original draft: Pascale Gibeau, Wendy J. Palen.
Writing – review & editing: Michael J. Bradford.
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